comment - Curtis Cartmill creation
comment - Barry Robson test run project GAW13.5
comment Standard pharmacogenomic data test
# is also a comment indicator, often used to suppress a command
#pilot version=on
auditor=Barry

input file=icaprecords.csv

#CHECK TEST FILES USED PRIOR TO THIS RUN WERE
#input file=test.csv
#input file=barry test 2.txt
#input file=barry test 3.txt
#input file=barry test 4.txt
#input file=barry test 5.txt
#input file=bug.csv
#input file=clinical2.csv
#input file=mushlin50.csv
#input file=new.csv
#input file=new2.csv
#input file=new3.csv
#input file=new4.csv
#input file=new5.csv
#input file=out001.csv
#input file=tag.dat
#input file=age21-hgt21-wgt21.txt
#input file=p38.csv
#input file=cardiotest.csv


#basic mathematical parameter settings
set prior=0
set Riemann zeta s=1

#input format
first line metadata=on
#skip lines matching=Clinical Lab Test Results
lines to skip after matches=on
divide all data by n=off
ignore unknown=-9
delimit record=\n
delimit line=\n
delimit item=,
#delimit item=1wsOR\t
#the above means at least 1 whitespace, or tab or comma separates items
shift item=off
shift record=off
columns=off


#mode of ineterpretation of lines, once read
maximum items per record sample=6
#maximum items per record sample=20
maximum number of item types=2000
maximum number of items per event=6
#maximum number of items per event=20
#partition state=fast_weight=220
#partition state=diastolic=80
#external data indicators=file:=;transform:
external data indicators=&
#pruning procedures
minimum frequency=off
maximum sparse frequency=off


#processing tasks
run test=off
advanced mode=on
allow duplicates=off
associations=on
fuzzy=on
pairs=on
# usually - maximum exhaustive association multiplicity=4
maximum exhaustive association multiplicity=3
unseen=on
high dimensional covariance=off
#high dimensional covariance=0.01%=10
#optimization history=on

#affect what is is calculated and hence reported
report scores above nats=1.5
report scores below nats=-1.5
#interesting and uninteresting only increases tendancy, it does not eliminate.
#uninteresting=CRS#=Date
#interestng AND=TRIG=HGT

#affect what is reported, even if calculated
result must match=off
uniform format=on

#security
# password=barry